miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|262509518|gb|FP056718.1|FP056718 TCAACTTCTACTCTCATACTCTCATCACAAAACAAAACCAATCACTCCTCCCTCCCTTTGGATTCGCCGGCGGCGGTTTC
CTTTTCTATTCTCCTCCATTTTGAGATGGACTCCCGCCGGCGATCGACCTCCAAAGCCACCACCGCCCCCCCACCACCAC
CACACATGAAAATGAAAATGGGAGTGGGAGTGGGAGTGGGTCTACATCAACATCACAATGATAAAGAGCTCAAGGCCTCA
GACGCTTTGCCACTCCCACTTTACCTCACCAATGCTGTCTTCTTCACTCTGTTTTTCTCTGTGGTCTACTTCTTGCTCAC
TCGCTGGCGTGAGAAGATTCGTAACTCCACCCCTCTTCATGTCCTTAACTTGTCTGAGATAGTCGCCATCTTCGCCTTCA
TCGCTTCCTTCATCTACCTCCTTGGTTTCTTCGGAATCGATTTTGTCCAGTCGATTCTTCGACCTTCCACTGATCTCTGG
CCTAACGAGGATGAAATCGACGATGCCCAGAACCCAGACGAAATCGTTCTTAAAGAAGACTCCCGTAAAGTCCCTTGTGG
TGGTGGCCTCGATTGCTCA




Most similar to sp|O64966|HMDH1_GOSHI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O64966|HMDH1_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A
           reductase 1 OS=Gossypium hirsutum GN=HMG1 PE=3 SV=1
          Length = 585

 Score =  147 bits (372), Expect = 4e-35
 Identities = 78/121 (64%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
 Frame = +1

Query: 220 DKELKASDALPLPLYLTNAVFFTLFFSVVYFLLTRWREKIRNSTPLHVLNLSEIVXXXXX 399
           D   KASDALPLPLYLTNAVFFTLFFS VYFLL RWREKIR+STPLHV+  SEIV     
Sbjct: 25  DDSTKASDALPLPLYLTNAVFFTLFFSAVYFLLCRWREKIRSSTPLHVVTFSEIVAILAS 84

Query: 400 XXXXXYLLGFFGIDFVQS-ILRPSTDLWPNEDEIDDAQNPDEIVLKEDSRKVPCGGGLDC 576
                YLLGFFGIDFVQS +LRPS D+W  E   DD    + ++  ED+R VPCG  LD 
Sbjct: 85  VASFIYLLGFFGIDFVQSLVLRPSADVWATE---DDEVESEVLLRNEDARHVPCGQALDR 141

Query: 577 S 579
           S
Sbjct: 142 S 142